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Single Cell RNA-Sequencing Using Machine Learning

 

Single-cell RNA-sequencing becoming an effective tool for the diagnosis and prognosis of cancer and other diseaseTo significant advances in knowledge, improved methods for medical diagnosis and superior medical treatments with more effective and targeted results. A fundamental step in single-cell RNA-sequencing involves the identification of similarities between cells using mathematical techniques. As the field is still in its infancy, no best-practices have been determined for either the maths to use or their optimal software implementation.
This project sought to develop and analyse some new methods for the classification of cells into clusters of resemblance. It sought to create computational templates to supplement existing pipelines for single-cell RNAsequencing analysis. It implemented new techniques for gene-selection, dimensionality reduction and clustering algorithms.

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Research Team (June'2019-Present)

Scientist
Dr. MD. Ali Moni

USYD Fellow, Faculty of Medicine and Health, School of Medical Science/Biomedical Science, University of Sydney, Sydney. 

Researcher

Dr. Fida Hasan

Postdoctoral Research Fellow, Data Science Discipline, Faculty of Science and Engineering, School of EECS, QUT, Brisbane, Australia

research student

Patrick Knott

Student of Master’s in IT (MIT), Faculty of Science and Engineering, School of EECS, QUT, Brisbane, Australia. 

RESEARCH STUDENT

Lin Dong

Student of Master’s in IT (MIT), Faculty of Science and Engineering, School of EECS, QUT, Brisbane, Australia. 

RESEARCH STUDENT

Min Chul Kim

Student of Master’s in IT (MIT), Faculty of Science and Engineering, School of EECS, QUT, Brisbane, Australia. 

RESEARCH STUDENT

Anudeep G.

Student of Master’s in IT (MIT), Faculty of Science and Engineering, School of EECS, QUT, Brisbane, Australia. 

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